Publication List of Synge Todo

Preprint

• Keisuke Murota, Synge Todo,
  Local Basis Transformation to Mitigate Negative Sign Problems,
  preprint: arXiv:2501.18069.
• Yi Wei, Yuji Sekiya, Masaya Nakayama, Synge Todo,
  Quantum Machine Learning for Phishing URLs Detection: Implementation and Evaluation with Qiskit,
  preprint.
• Synge Todo,
  Markov Chain Monte Carlo in Tensor Network Representation,
  preprint: arXiv:2412.02974.
• Keiichi Tamai, Tsuyoshi Okubo, Truong Vinh Truong Duy, Naotake Natori, Synge Todo,
  Universal Scaling Laws of Absorbing Phase Transitions in Artificial Deep Neural Networks,
  preprint: arXiv:2307.02284.
• Ken M. Nakanishi, Synge Todo,
  Systematic construction of multi-controlled Pauli gate decompositions with optimal T-count,
  preprint: arXiv:2410.00910.
• 谷本寛樹, 渡大地, 篠崎佑太, 西山薫, 大久保毅, 藤堂眞治,
  テンソルトレインにおける重みの初期化方法の提案,
  preprint.
• Takumi Kobori, Synge Todo,
  Bayesian Inference of General Noise Model Parameters from Surface Code's Syndrome Statistics,
  preprint: arXiv:2406.08981.
• Taito Kutsuzawa, Synge Todo,
  Nested Iterative Shift-invert Diagonalization for Many-body Localization in the Random-field Heisenberg Chain,
  preprint: arXiv:2203.09732.
• Ruixiao Cao, Synge Todo,
  Fast-update in self-learning algorithm for continuous-time quantum Monte Carlo,
  preprint: arXiv:2106.11645.
• Markus Wallerberger, Sergei Iskakov, Alexander Gaenko, Joseph Kleinhenz, Igor Krivenko, Ryan Levy, Jia Li, Hiroshi Shinaoka, Synge Todo, Tianran Chen, Xi Chen, James P. F. LeBlanc, Joseph E. Paki, Hanna Terletska, Matthias Troyer, Emanuel Gull,
  Updated Core Libraries of the ALPS Project,
  preprint: arXiv:1811.08331.
• Hiroshi Watanabe, Satoshi Morita, Hajime Inaoka, Haruhiko Matsuo, Synge Todo, Nobuyasu Ito,
  245 Billion Updates/s on a Molecular Dynamics Simulation Involving Multiple Bubble Nuclei,
  preprint.

Peer-Reviewed Articles

• Kwok Ho Pai, Shinichiro Akiyama, Synge Todo,
  Grassmann tensor renormalization group approach to (1+1)-dimensional two-color lattice QCD at finite density,
  J. High Energ. Phys. 2025, 27 (2025). (preprint: arXiv:2410.09485)
• Sora Shiratani, Synge Todo,
  Stochastic approximation analysis of dynamical quantum critical phenomena in long-range transverse-field Ising chain,
  Phys. Rev. E 110, 064106 (14pp) (2024). (preprint: arXiv:2305.14121)
• Hidemaro Suwa, Synge Todo,
  Control of Probability Flow in Markov Chain Monte Carlo---Nonreversibility and Lifting,
  J. Chem. Phys. 161, 174107 (10pp) (2024). (preprint: arXiv:1207.0258)
• Ken M. Nakanishi, Takahiko Satoh, Synge Todo,
  Decompositions of multiple controlled-Z gates on various qubit-coupling graphs,
  Phys. Rev. A 110, 012604 (7pp) (2024). (preprint: arXiv:2109.13223)
• Yuri Alexeev, Maximilian Amsler, …, Synge Todo, et al.,
  Quantum-centric supercomputing for materials science: A perspective on challenges and future directions,
  Future Generation Computer Systems 160, 666-710 (2024). (preprint: arXiv:2312.09733)
• Kota Ido, Mitsuaki Kawamura, Yuichi Motoyama, Kazuyoshi Yoshimi, Youhei Yamaji, Synge Todo, Naoki Kawashima, Takahiro Misawa,
  Update of HΦ: Newly added functions and methods in versions 2 and 3,
  Comp. Phys. Comm. 298, 109093 (2024). (preprint: arXiv:2307.13222)
• Seiji Yoshikawa, Ryuhei Sato, Ryosuke Akashi, Synge Todo, Shinji Tsuneyuki,
  A Noise-Robust Data Assimilation Method for Crystal Structure Prediction Using Powder Diffraction Intensity,
  J. Chem. Phys. 157, 224112 (8pp) (2022). (preprint: arXiv:2209.05850)
• Yuichi Motoyama, Kazuyoshi Yoshimi, Takeo Kato, Synge Todo,
  MateriApps LIVE! and MateriApps Installer: Environment for starting and scaling up materials science simulations,
  Software X 20, 101210 (8pp) (2022). (preprint: arXiv:2205.01991)
• RuQing G. Xu, Tsuyoshi Okubo, Synge Todo, Masatoshi Imada,
  Optimized Implementation for Calculation and Fast-Update of Pfaffians Installed to the Open-Source Fermionic Variational Solver mVMC,
  Comp. Phys. Comm. 277, 108375 (10pp) (2022). (preprint: arXiv:2105.13098)
• Tomoyuki Morishita, Synge Todo,
  Randomized-gauge test for machine learning of Ising model order parameter,
  J. Phys. Soc. Jpn. 91, 044001 (9pp) (2022). (preprint: arXiv:2109.05533)
• Daiki Adachi, Tsuyoshi Okubo, Synge Todo,
  Bond-weighted tensor renormalization group,
  Phys. Rev. B 105, L060402 (6pp) (2022). (preprint: arXiv:2011.01679)
• Fumihiro Ishikawa, Hidemaro Suwa, Synge Todo,
  Neural Network Approach to Construction of Classical Integrable Systems,
  J. Phys. Soc. Jpn. 90, 093001 (5pp) (2021). (preprint: arXiv:2103.00372)
• Botao Li, Synge Todo, A. C. Maggs, Werner Krauth,
  Multithreaded event-chain Monte Carlo with local times,
  Comp. Phys. Comm. 261, 107702 (10pp) (2021). (preprint: arXiv:2004.11040)
• Ken M. Nakanishi, Keisuke Fujii, Synge Todo,
  Sequential minimal optimization for quantum-classical hybrid algorithms,
  Phys. Rev. Research 2, 043158 (10pp) (2020). (preprint: arXiv:1903.12166)
• Daiki Adachi, Tsuyoshi Okubo, Synge Todo,
  Anisotropic tensor renormalization group,
  Phys. Rev. B 102, 054432 (7pp) (2020). (preprint: arXiv:1906.02007)
• Takeo Hoshi, Mitsuaki Kawamura, Kazuyoshi Yoshimi, Yuichi Motoyama, Takahiro Misawa, Youhei Yamaji, Synge Todo, Naoki Kawashima, Tomohiro Sogabe,
  Kω - Open-source library for the shifted Krylov subspace method of the form (zI-H)x=b,
  Comp. Phys. Comm. 258, 107536 (10pp) (2021). (preprint: arXiv:2001.08707)
• Tatsuhiko Shirai, Synge Todo, Seiji Miyashita,
  Dynamical phase transition in Floquet optical bistable systems: An approach from finite-size quantum systems,
  Phys. Rev. A 101, 013809 (7pp) (2020). (preprint: arXiv:1910.10618)
• Daiki Adachi, Naoto Tsujimoto, Ryosuke Akashi, Synge Todo, Shinji Tsuneyuki,
  Search for Common Minima in Joint Optimization of Multiple Cost Functions,
  Comp. Phys. Comm. 241, 92-97 (2019). (preprint: arXiv:1808.06846)
• Hiroshi Watanabe, Satoshi Morita, Synge Todo, Naoki Kawashima,
  Fast algorithm for generating random bit strings and multispin coding for directed percolation,
  J. Phys. Soc. Jpn. 88, 024004 (8pp) (2019). (preprint: arXiv:1808.05009)
• Synge Todo, Haruhiko Matsuo, Hideyuki Shitara,
  Parallel loop cluster quantum Monte Carlo simulation of quantum magnets based on global union-find graph algorithm,
  Comp. Phys. Comm. 239, 84-93 (2019). (preprint: arXiv:1810.07485)
• Fumihiro Ishikawa, Synge Todo,
  Localized mode and nonergodicity of a harmonic oscillator chain,
  Phys. Rev. E 98, 062140 (8pp) (2018). (preprint: arXiv:1805.02923)
• Yuichi Motoyama, Synge Todo,
  Z_N Berry phase and symmetry protected topological phases of SU(N) antiferromagnetic Heisenberg chain,
  Phys. Rev. B 98, 195127 (6pp) (2018). (preprint: arXiv:1508.00960)
• Tatsuhiko Shirai, Synge Todo, Hans de Raedt, Seiji Miyashita,
  Optical bistability in a low-photon-density regime,
  Phys. Rev. A 98, 043802 (13pp) (2018). (preprint: arXiv:1804.09853)
• Naoto Tsujimoto, Daiki Adachi, Ryosuke Akashi, Synge Todo, Shinji Tsuneyuki,
  Crystal structure prediction supported by incomplete experimental data,
  Phys. Rev. Materials 2, 053801 (7pp) (2018). (preprint: arXiv:1705.08613)
• Kazuya Nomura, Yasuhiro H. Matsuda, Yasuo Narumi, Koichi Kindo, Shojiro Takeyama,Yuko Hosokoshi, Toshio Ono, Naoya Hasegawa, Hidemaro Suwa, Synge Todo,
  Magnetization process of the S = 1/2 two-leg organic spin-ladder compound BIP-BNO,
  J. Phys. Soc. Jpn. 86, 104713 (3pp) (2017). (preprint: arXiv:1706.08008)
• Mitsuaki Kawamura, Kazuyoshi Yoshimi, Takahiro Misawa, Youhei Yamaji, Synge Todo, Naoki Kawashima,
  Quantum Lattice Model Solver HΦ,
  Comp. Phys. Comm. 217, 180-192 (2017). (preprint: arXiv:1703.03637)
• Alexander Gaenko, Andrey E. Antipov, Gabriele Carcassi, Tianran Chen, Xi Chen, Qiaoyuan Dong, Lukas Gamper, Jan Gukelberger, Ryo Igarashi, Sergey Iskakov, Mario Kӧnz, James P. F. LeBlanc, Ryan Levy, Ping Nang Ma, Joseph E Paki, Hiroshi Shinaoka, Synge Todo, Matthias Troyer, Emanuel Gull,
  Updated Core Libraries of the ALPS Project,
  Comp. Phys. Comm. 213, 235-251 (2017). (preprint: arXiv:1609.03930)
• Toshiki Horita, Hidemaro Suwa, Synge Todo,
  Upper and lower critical decay exponents of Ising ferromagnet with long-range interaction,
  Phys. Rev. E 95, 012143 (11pp) (2017). (preprint: arXiv:1605.09496)
• Shinya Yasuda, Hidemaro Suwa, Synge Todo,
  Stochastic approximation of dynamical exponent at quantum critical point,
  Phys. Rev. B 92, 104411 (10pp) (2015). (preprint: arXiv:1506.04837)
• Hidemaro Suwa, Synge Todo,
  Generalized Moment Method for Gap Estimation and Quantum Monte Carlo Level Spectroscopy,
  Phys. Rev. Lett. 115, 080601 (5pp) (2015). (preprint: arXiv:1402.0847)
• Takafumi Suzuki, Kenji Harada, Haruhiko Matsuo, Synge Todo, Naoki Kawashima,
  Thermal Phase Transition of Generalized Heisenberg Models for SU(N) Spins on Square and Honeycomb Lattices,
  Phys. Rev. B 91, 094414 (7pp) (2015).
• Akiko Masaki, Takafumi Suzuki, Kenji Harada, Synge Todo, Naoki Kawashima,
  Parallelized Quantum Monte Carlo Algorithm with Nonlocal Worm Updates,
  Phys. Rev. Lett. 112, 140603 (5pp) (2014). (preprint: arXiv:1307.0328)
• Shinya Yasuda, Synge Todo,
  Monte Carlo simulation with aspect ratio optimization: Anomalous anisotropic scaling in dimerized antiferromagnet,
  Phys. Rev. E 88, 061301(R) (5pp) (2013). (preprint: arXiv:1307.4529)
• Kenji Harada, Takafumi Suzuki, Tsuyoshi Okubo, Haruhiko Matsuo, Jie Lou, Hiroshi Watanabe, Synge Todo, Naoki Kawashima,
  Possibility of Deconfined Criticality in SU(N) Heisenberg Models at Small N,
  Phys. Rev. B 88, 220408(R) (4pp) (2013). (preprint: arXiv:1307.0501)
• H. Nakano S. Todo, T. Sakai,
  Long-Range Order of the Three-Sublattice Structure in the S=1 Heisenberg Antiferromagnet on the Spatially Anisotropic Triangular Lattice,
  J. Phys. Soc. Jpn. 82, 043715 (5pp) (2013). (preprint: arXiv:1302.6663)
• Yuichi Motoyama, Synge Todo,
  Path-integral Monte Carlo method for the local Z₂ Berry phase,
  Phys. Rev. E 87, 021301(R) (5pp) (2013). (preprint: arXiv:1211.3471)
• J. Nasu, S. Todo, S. Ishihara,
  Ordering and Excitation in Orbital Compass Model on a Checkerboard Lattice,
  Phys. Rev. B 85, 205141 (12pp) (2012). (preprint: arXiv:1203.3683)
• T. Nakada, T. Mori, S. Miyashita, M. Nishino, S. Todo, W. Nicolazzi, P. A. Rikvold,
  Critical temperature and correlation length of an elastic interaction model for spin-crossover materials,
  Phys. Rev. B 85, 054408 (8pp) (2012). (preprint: arXiv:1110.6257)
• B. Bauer, L. D. Carr, A. Feiguin, J. Freire, S. Fuchs, L. Gamper, J. Gukelberger, E. Gull, S. Gürtler, A. Hehn, R. Igarashi, S.V. Isakov, D. Koop, P.N. Ma, P. Mates, H. Matsuo, O. Parcollet, G. Pawlowski, J.D. Picon, L. Pollet, E. Santos, V.W. Scarola, U. Schollwöck, C. Silva, B. Surer, S. Todo, S. Trebst, M. Troyer, M.L. Wall, P. Werner, S. Wessel,
  The ALPS project release 2.0: Open source software for strongly correlated systems,
  J. Stat. Mech. P05001 (34pp) (2011). (preprint: arXiv:1101.2646)
• A. van Rynbach, S. Todo, S. Trebst,
  Orbital Ordering in e_g Orbital Systems: Ground States and Thermodynamics of the 120° Model,
  Phys. Rev. Lett. 105, 146402 (4pp) (2010). (preprint: arXiv:1006.4604)
• Hidemaro Suwa, Synge Todo,
  Markov Chain Monte Carlo Method without Detailed Balance,
  Phys. Rev. Lett. 105, 120603 (4pp) (2010). (preprint: arXiv:1007.2262)
• K. Yamamoto, S. Todo, S. Miyashita,
  Successive phase transitions at finite temperatures of the supersolid in the three-dimensional extended Bose-Hubbard model,
  Phys. Rev. B 79, 094503 (6pp) (2009). (preprint: arXiv:0807.0948)
• Kouki Fukui, Synge Todo,
  Order-N cluster Monte Carlo method for spin systems with long-range interactions,
  J. Comp. Phys. 228, 2629-2642 (2009). (preprint: arXiv:0802.0272)
• H. Yamaguchi, S. Kimura, Z. Honda, K. Okunishi, S. Todo, K. Kindo, M. Hagiwara,
  High-Field Magnetism of the Spin-Ladder Material Na2Fe2(C2O4)3(H2O)2,
  J. Phys. Soc. Jpn. 78, 124701 (6pp) (2009).
• Synge Todo, Akira Shibasaki,
  Improved chain mean-field theory for quasi-one-dimensional quantum magnets,
  Phys. Rev. B 78, 224411 (8pp) (2008). (preprint: arXiv:0805.3097)
• D. Yamamoto, S. Todo, S. Kurihara,
  Green's function theory for spin-1/2 ferromagnets with an easy-plane exchange anisotropy,
  Phys. Rev. B 78, 024440 (7pp) (2008).
• A.F. Albuquerque, F. Alet, P. Corboz, P. Dayal, A. Feiguin, L. Gamper, E. Gull, S. Gürtler, A. Honecker, R. Igarashi, M. Körner, A. Kozhevnikov, A. Läuchli, S.R. Manmana, M. Matsumoto, I.P. McCulloch, F. Michel, R.M. Noack, G. Pawlowski, L. Pollet, T. Pruschke, U. Schollwöck, S. Todo, S. Trebst, M. Troyer, P. Werner, S. Wessel (ALPS collaboration),
  The ALPS project release 1.3: open source software for strongly correlated systems,
  J. Mag. Mag. Mat. 310, 1187-1193 (2007). (preprint: arXiv:0801.1765)
• M. Al Hajj, F. Alet, S. Capponi, M.B. Lepetit, J.P. Malrieu, S. Todo,
  Parity law of the singlet-triplet gap in graphitic ribbons,
  Eur. Phys. J. B 51, 517-522 (2006). (preprint: arXiv:cond-mat/0601293)
• Synge Todo,
  Universal Reduction of Effective Coordination Number in the Quasi-One-Dimensional Ising Model,
  Phys. Rev. B 74, 104415 (11pp) (2006). (preprint: arXiv:cond-mat/0606790)
• Chitoshi Yasuda, Synge Todo, Hajime Takayama,
  Bond-Dilution-Induced Quantum Phase Transitions in Heisenberg Antiferromagnets,
  J. Phys. Soc. Jpn. 75, 124704 (7pp) (2006). (preprint: arXiv:cond-mat/0607786)
• Takayuki Arakawa, Synge Todo, Hajime Takayama,
  Randomness-Driven Quantum Phase Transition in Bond-Alternating Haldane Chain,
  J. Phys. Soc. Jpn. 74, 1127-1130 (2005). (preprint: arXiv:cond-mat/0410755)
• C. Yasuda, S. Todo, K. Hukushima, F. Alet, M. Keller, M. Troyer, H. Takayama,
  Neel Temperature of Quasi-Low-Dimensional Heisenberg Antiferromagnets,
  Phys. Rev. Lett. 94, 217201 (4pp) (2005). (preprint: arXiv:cond-mat/0312392)
• F. Alet, P. Dayal, A. Grzesik, A. Honecker, M. Körner, A. Läuchli, S.R. Manmana, I.P. McCulloch, F. Michel, R.M. Noack, G. Schmid, U. Schollwöck, F. Stöckli, S. Todo, S. Trebst, M. Troyer, P. Werner, S. Wessel (ALPS collaboration),
  The ALPS project: open source software for strongly correlated systems,
  J. Phys. Soc. Jpn. Suppl. 74, 30-35 (2005). (preprint: arXiv:cond-mat/0410407)
• M. Matsumoto, T. Sakai, M. Sato, H. Takayama, S. Todo,
  Quantum phase transitions of spin chiral nanotubes,
  Physica E 29, 660-663 (2005). (preprint: arXiv:cond-mat/0506626)
• Munehisa Matsumoto, Synge Todo, Masaaki Nakamura, Chitoshi Yasuda, Hajime Takayama,
  Gound state of antiferromagnetic Heisenberg two-leg ladder in terms of the valence-bond solid picture,
  Physica B 329-333, 1010-1011 (2003). (preprint: arXiv:cond-mat/0206386)
• Masaaki Nakamura and Synge Todo,
  Order Parameter to Characterize Valence-Bond-Solid States in Quantum Spin Chains,
  Phys. Rev. Lett. 89, 077204 (4pp) (2002). (preprint: arXiv:cond-mat/0112377)
• G. Schmid, S. Todo, M. Troyer, A. Dorneich,
  Finite-Temperature Phase Diagram of Hard-Core Bosons in Two Dimensions,
  Phys. Rev. Lett. 88, 167208 (4pp) (2002). (preprint: arXiv:cond-mat/0110024)
• Munehisa Matsumoto, Chitoshi Yasuda, Synge Todo, Hajime Takayama,
  Ground-state phase diagram of quantum Heisenberg antiferromagnets on the anisotropic dimerized square lattice,
  Phys. Rev. B 65, 014407 (8pp) (2001). (preprint: arXiv:cond-mat/0107115)
• Synge Todo, Munehisa Matsumoto, Chitoshi Yasuda, Hajime Takayama,
  Plaquette-Singlet Solid State and Topological Hidden Order in Spin-1 Antiferromagnetic Heisenberg Ladder,
  Phys. Rev. B 64, 224412 (9pp) (2001). (preprint: arXiv:cond-mat/0106073)
• Chitoshi Yasuda, Synge Todo, Munehisa Matsumoto, Hajime Takayama,
  Site-Dilution-Induced Antiferromagnetic Long-Range Order in a Two-Dimensional Spin-Gapped Heisenberg Antiferromagnet,
  Phys. Rev. B 64, 092405 (4pp) (2001). (preprint: arXiv:cond-mat/0101337)
• Synge Todo, Kiyoshi Kato,
  Cluster Algorithms for General-S Quantum Spin Systems,
  Phys. Rev. Lett. 87, 047203 (4pp) (2001). (preprint: arXiv:cond-mat/9911047)
• Chitoshi Yasuda, Synge Todo, Kenji Harada, Naoki Kawashima, Seiji Miyashita, Hajime Takayama,
  Classical Correlation-Length Exponent in Non-Universal Quantum Phase Transition of Diluted Heisenberg Antiferromagnet,
  Phys. Rev. B 64, R140415 (4pp) (2001). (preprint: arXiv:cond-mat/0010397)
• Kiyoshi Kato, Synge Todo, Kenji Harada, Naoki Kawashima, Seiji Miyashita, Hajime Takayama,
  Quantum Phase Transition of Randomly-Diluted Heisenberg Antiferromagnet on a Square Lattice,
  Phys. Rev. Lett. 84, 4204-4207 (2000). (preprint: arXiv:cond-mat/9905379)
• Synge Todo, Kiyoshi Kato, Hajime Takayama,
  Quantum Monte Carlo Study of S=1 Random Antiferromagnetic Heisenberg Chain,
  J. Phys. Soc. Jpn. Suppl. 69A, 355-362 (2000).
• Synge Todo,
  Transfer-Matrix Study of Negative-Fugacity Singularity of Hard-Core Lattice Gas,
  Int. J. Mod. Phys. C 10, 517-529 (1999).
• Synge Todo, Masuo Suzuki,
  Transfer-Matrix Method for Hard-Square Lattice Gas,
  Int. J. Mod. Phys. C 7, 811-824 (1996).
• Synge Todo, Masuo Suzuki,
  Effective Exclusive Volume for Hard-Core Systems in the Liquid Region,
  J. Phys. Soc. Jpn. 63, 3552-3555 (1994).

Conference Proceedings

• Takumi Kobori, Yasunari Suzuki, Yosuke Ueno, Teruo Tanimoto, Synge Todo, Yuuki Tokunaga,
  LSQCA: Resource-Efficient Load/Store Architecture for Limited-Scale Fault-Tolerant Quantum Computing,
  2025 IEEE International Symposium on High Performance Computer Architecture (HPCA). (preprint: arXiv:2412.20486)
• Shota Sugawara, Kazuki Inomata, Tsuyoshi Okubo, Synge Todo,
  Embedding of Tree Tensor Networks into Shallow Quantum Circuits,
  Proceedings of the 17th International Conference on Agents and Artificial Intelligence - Volume 1: QAIO 793-803 (2025). (preprint: arXiv:2501.18856)
• Ho Pai Kwok, Shinichiro Akiyama, Synge Todo,
  Two-color lattice QCD in (1+1) dimensions with Grassmann tensor renormalization group,
  41st International Symposium on Lattice Field Theory (LATTICE2024) 466, 364 (2025). (preprint: arXiv:2501.18918)
• Daichi Watari, Hiroki Tanimoto, Tsuyoshi Okubo, Synge Todo, Kaoru Nishiyama,
  Tensor Network-Based Light-Weight Energy Forecasting for Virtual Power Plant,
  13th International Conference on Renewable Energy Research and Applications (ICRERA2024) 469, 474 (2024).
• 渡大地, 谷本寛樹, 大久保毅, 藤堂眞治, 西山薫,
  テンソルネットワークを用いた電力需要予測モデルの軽量化に関する研究,
  情報科学技術フォーラム講演論文集 (FIT2024) 23, 527-530 (2024).
• 玉井敬一, 大久保毅, ヴィン チュオン ズイ チュオン, 名取直毅, 藤堂眞治,
  信号伝播過程におけるスケーリング則に基づく人工深層ニューラルネットワークの系統的な設計,
  人工知能学会全国大会論文集 JSAI2024, 3P5OS17a03 (2024).
• 小堀拓生, 鈴木泰成, 藤堂眞治, 徳永裕己,
  誤り耐性量子計算機上で記憶階層を実現する高圧縮スキャン式メモリレイアウト,
  情報処理学会研究報告 QS-11(19), 1-9 (2024).
• 玉井敬一, 大久保毅, ヴィン チュオン ズイ チュオン, 名取直毅, 藤堂眞治,
  人工深層ニューラルネットワークが示す吸収状態転移,
  人工知能学会全国大会論文集 JSAI2023, 2Q6OS20b02 (2023).
• Hiroshi Watanabe, Satoshi Morita, Hajime Inaoka, Haruhiko Matsuo, Synge Todo, Nobuyasu Ito,
  Scalable and Highly SIMD-vectorized Molecular Dynamics Simulation Involving Multiple Bubble Nuclei,
  in Proceedings of the International Conference on High Performance Computing, Networking, Storage and Analysis 2015 (SC15) (Austin, USA, Nov. 2015).
• Yusuke Konishi, Ryo Igarashi, Shusuke Kasamatsu, Takeo Kato, Naoki Kawashima, Tsutomu Kawatsu, Hikaru Kouta, Masashi Noda, Shoichi Sasaki, Yayoi Terada, Synge Todo, Shigehiro Tsuchida, Kazuyoshi Yoshimi, Kanako Yoshizawa,
  MateriApps --- a Portal Site of Materials Science Simulation,
  JPS Conf. Proc. 5, 011007 (5pp) (2015).
• Yuichi Motoyama, Synge Todo,
  Path-Integral Monte Carlo for the Gauge-Fixed Berry Connection and the Local Z₂ Berry Phase,
  JPS Conf. Proc. 1, 012130 (5pp) (2014). (preprint: arXiv:1310.0205)
• Shinya Yasuda, Synge Todo,
  Numerical Analysis of Quantum Phase Transitions with Dynamic Control of Anisotropy,
  JPS Conf. Proc. 1, 012127 (5pp) (2014).
• 片桐孝洋, 大島聡史, 中島研吾, 米村崇, 熊洞宏樹, 樋口清隆, 橋本昌人, 高山恒一, 藤堂眞治, 岩田潤一, 内田和之, 佐藤正樹, 羽角博康, 黒木聖夫, 安達斉, 江口義之,
  レイテンシコアの高度化・高効率化による将来のHPCIシステムに関する調査研究のアプリケーションの異機種環境での評価 ～メニーコア環境を中心に～,
  情報処理学会研究報告 HPC-143(26), 1-13 (2014).
• Synge Todo, Hidemaro Suwa,
  Geometric Allocation Approaches in Markov Chain Monte Carlo,
  J. Phys.: Conf. Ser. 473, 012013 (10pp) (2013). (preprint: arXiv:1310.6615)
• Synge Todo, Haruhiko Matsuo, Hideyuki Shitara,
  Loop Cluster Monte Carlo Simulation of Quantum Magnets Based on Global Union-Find Algorithm,
  in Proceedings of the International Conference on High Performance Computing, Networking, Storage and Analysis 2013 (SC13) (Denver, USA, Nov. 2013).
• 諏訪秀麿, 藤堂眞治,
  詳細つりあいを満たさないマルコフ連鎖モンテカルロ法とその一般化,
  数理解析研究所 講究録 1848, 93-107 (2013).
• 坂下達哉, 五十嵐亮, 大久保毅, 藤堂眞治,
  並列固有値計算ライブラリの統一的インターフェースの開発とベンチマーク,
  情報処理学会研究報告 HPC-139(14), 1-4 (2013).
• 片桐孝洋, 大島聡史, 中島研吾, 米村崇, 熊洞宏樹, 樋口清隆, 橋本昌人, 高山 恒一, 藤堂眞治, 岩田潤一, 内田和之, 佐藤正樹, 羽角博康, 黒木聖夫,
  レイテンシコアの高度化・高効率化による将来のHPCIシステムに関する調査研究のためのアプリケーション最適化と異機種計算機環境での性能評価,
  情報処理学会研究報告 HPC-139(4), 1-9 (2013).
• Hidemaro Suwa, Synge Todo,
  Geometric allocation approach for transition kernel of Markov chain,
  in Monte Carlo Methods and Applications (proceedings of Eighth IMACS Seminar on Monte Carlo Methods), ed. K. K. Sabelfeld, I. Dimov, pp. 213-222 (De Gruyter, Berlin, 2012). (preprint: arXiv:1106.3562)
• 片桐孝洋, 大島聡史, 中島研吾, 米村崇, 熊洞宏樹, 樋口清隆, 橋本昌人, 高山恒一, 藤堂眞治, 岩田潤一, 内田和之, 佐藤正樹, 羽角博康, 黒木聖夫,
  レイテンシコアの高度化・高効率化による将来のHPCIシステムに関する調査研究のためのアプリケーションと性能評価,
  情報処理学会研究報告 HPC-137(2), 1-12 (2012).
• Daisuke Yamamoto, Synge Todo, Susumu Kurihara,
  Application of the Green's Function Method to an Easy-Plane Heisenberg Model,
  J. Phys.: Conf. Ser. 150, 042234 (4pp) (2009).
• Munehisa Matsumoto, Synge Todo, Chitoshi Yasuda, Hajime Takayama,
  Quantum Phase Transitions of Quasi-One-Dimensional Heisenberg Antiferromagnets,
  in Computer Simulation Studies in Condensed-Matter Physics XVI, ed. D. P. Landau, S. P. Lewis, and H.-B. Schuettler, pp. 61-66 (Springer-Verlag, Berlin, 2004). (preprint: arXiv:cond-mat/0310619)
• Synge Todo,
  Parallel Quantum Monte Carlo Simulation of S=3 Antiferromagnetic Heisenberg Chain,
  in Computer Simulation Studies in Condensed-Matter Physics XV, ed. D. P. Landau, S. P. Lewis, and H.-B. Schuettler, pp. 89-94 (Springer-Verlag, Berlin, 2003).
• Guido Schmid, Synge Todo, Matthias Troyer, George Batrouni,
  Melting of Stripes in a Two Dimensional Hard-Core Boson Hubbard Model,
  in Computer Simulation Studies in Condensed-Matter Physics XV, ed. D. P. Landau, S. P. Lewis, and H.-B. Schuettler, pp. 95-99 (Springer-Verlag, Berlin, 2003).
• Chitoshi Yasuda, Synge Todo, Munehisa Matsumoto, Hajime Takayama,
  Bond-dilution effects on two-dimensional spin-gapped Heisenberg antiferromagnets,
  J. Phys. Chem. Solids 63, 1607-1610 (2002). (preprint: arXiv:cond-mat/0109137)
• Chitoshi Yasuda, Synge Todo, Munehisa Matsumoto, Hajime Takayama,
  Dilution Effects on Two-Dimensional Antiferromagnets with Non-Magnetic Spin-Gapped Ground State,
  Prog. Theor. Phys. Suppl. 145, 339-344 (2002). (preprint: arXiv:cond-mat/0204397)
• Munehisa Matsumoto, Synge Todo, Chitoshi Yasuda, Hajime Takayama,
  Gound State of S=1 Heisenberg Ladders,
  Prog. Theor. Phys. Suppl. 145, 221-224 (2002).
• Masaaki Nakamura, Synge Todo,
  Novel Order Parameter to Characterize Valence-Bond-Solid States,
  Prog. Theor. Phys. Suppl. 145, 217-220 (2002). (preprint: arXiv:cond-mat/0201204)
• Synge Todo,
  Quantum Cluster Algorithm Monte Carlo Method and its Application to Higher-Spin Heisenberg Antiferromagnets,
  Prog. Theor. Phys. Suppl. 145, 188-193 (2002).
• Synge Todo, Kiyoshi Kato,
  Continuous-Time Loop Algorithm for General-S Spin Systems,
  Prog. Theor. Phys. Suppl. 138, 535-536 (2000).
• Synge Todo, Chitoshi Yasuda, Kiyoshi Kato, Kenji Harada, Naoki Kawashima, Seiji Miyashita, Hajime Takayama,
  Quantum Phase Transition of Two-Dimensional Dilute Heisenberg Antiferromagnet,
  Prog. Theor. Phys. Suppl. 138, 507-512 (2000).
• Synge Todo, Kiyoshi Kato, Hajime Takayama, Kenji Harada, Naoki Kawashima, Seiji Miyashita,
  Quantum Monte Carlo Study of Site-Diluted Heisenberg Antiferromagnet on a Square Lattice,
  Int. J. Mod. Phys. C 10, 1399-1407 (1999).
• Synge Todo, Kiyoshi Kato, Hajime Takayama,
  Quantum Monte Carlo Study of Random Antiferromagnetic Heisenberg Chain,
  in Computer Simulation Studies in Condensed Matter Physics XI, ed. D.P. Landau and H.-B. Schuettler, pp. 57-61 (Springer-Verlag, Berlin, 1999).
• Synge Todo, Masuo Suzuki,
  Hard-Core Lattice Gas with Next-Nearest-Neighbor Exclusion on Triangular Lattice: Four-State Potts Model Universality Class,
  in International Symposium on Coherent Approaches to Fluctuations, ed. M. Suzuki, N. Kawashima, pp. 86-89 (World Scientific, Singapore, 1996).

Books / Commentaries / Reports

• 尾崎泰助, 加藤岳生, 井戸康太, 福田将大, 藤堂眞治,
  物性研の計算物性科学コミュニティ支援活動（その2：最終回）,
  固体物理 59, 381-387 (2024).
• 藤堂眞治, 足立幸穂 (編) (HPCIC計算科学フォーラム),
  計算科学ロードマップ2023.
• 諏訪秀麿, 藤堂眞治,
  確率の流れをあやつるモンテカルロ法---詳細つりあいの破れとリフティング,
  日本物理学会誌 77, 731-739 (2022).
• 井戸康太, 笠松秀輔, 加藤岳生, 藤堂眞治,
  物質科学シミュレーションのポータルサイトMateriApps -シミュレーション初心者のためのソフトウェアの探し方-,
  静電気学会誌 45, 188 (2021).
• 藤原毅夫, 藤堂眞治,
  データ科学のための微分積分・線形代数 - MATLABで体験する数学基礎 (東京大学出版会, 2021).
• 藤堂眞治,
  Google Colab x Python! 科学シミュレータ製作,
  トラ技ジュニア 42, 6-17 (2020).
• 藤堂眞治, 常行真司,
  X線回折実験とシミュレーションのデータ同化による結晶構造解析,
  日本結晶学会誌 62, 51-55 (2020).
• 井戸康太, 加藤岳生, 三澤貴宏, 藤堂眞治,
  ソフトウェア紹介「物質科学シミュレーションのポータルサイトMateriApps ― 分子動力学シミュレーションのはじめの一歩,
  分子シミュレーション学会誌 “アンサンブル” 22, 74-80 (2020).
• 藤堂眞治,
  「1968年のモンテカルロシミュレーション」50周年に寄せて,
  日本物理学会誌 74, 787-789 (2019).
• Synge Todo,
  Monte Carlo study of Ising model with non-integer effective dimensions,
  Invited review article in Annual Report 2017 of Supercomputer Center, Institute for Solid State Physics, University of Tokyo (2018).
• 本山裕一, 三澤貴宏, 加藤岳生, 藤堂眞治,
  物質科学シミュレーションのポータルサイト MateriApps,
  固体物理 52, 743-755 (2017).
• 山地洋平, 三澤貴宏, 吉見一慶, 河村光晶, 藤堂眞治, 川島直輝,
  量子格子模型の汎用数値対角化パッケージHΦ -スピン液体近傍の熱・スピン励起への適用-,
  固体物理 52, 539-550 (2017).
• 藤堂眞治(編),
  ケイサンブッシツカガク,
  計算物質科学イニシアティブ (学研プラス, 2016).
• 渡辺宙志, 藤堂眞治,
  特集「『京』が拓いた物性物理」について,
  分子シミュレーション研究会会誌 アンサンブル 18, 5-6 (2016).
• 藤堂眞治,
  "実験技術"としての量子多体系シミュレーションソフトウェア ALPS,
  日本物理学会誌 70, 275-282 (2015).
• 藤堂眞治,
  新著紹介「岩波講座 計算科学 別巻 スーパーコンピュータ」,
  日本物理学会誌 68, 758-759 (2013).
• Synge Todo,
  Loop Algorithm,
  in Strongly Correlated Systems: Numerical Methods (Springer Series in Solid-State Sciences), ed. A. Avella, F. Mancini, pp. 153-184 (Springer-Verlag, Berlin, 2013).
• 藤堂眞治,
  量子モンテカルロ法による新しい量子相・量子臨界現象の探求,
  計算工学 17, 2841-2844 (2012).
• 藤堂眞治,
  計算物質科学イニシアティブ(CMSI)研究会報告,
  計算工学 17, 2765-2766 (2012).
• 諏訪秀麿, 藤堂眞治,
  詳細つりあいを満たさないモンテカルロ法,
  日本物理学会誌 66, 370-374 (2011).
• Statistical Physics of Quantum Systems --novel orders and dynamics--,
  ed. Naomichi Hatano, Naoki Kawashima, Seiji Miyashita, Masaki Oshikawa, Toru Sakai, Masahiro Shiroishi, Synge Todo, J. Phys. Soc. Jpn. Suppl. 74, (2005).
• C. Yasuda, S. Todo, K. Hukushima, F. Alet, M. Keller, M. Troyer, H. Takayama,
  New Type of Universality on Neel Temperatures of Quasi-Low-Dimensional Antiferromagnets,
  Invited review article in Annual Report 2004 of Supercomputer Center, Institute for Solid State Physics, University of Tokyo (2005).
• Synge Todo, Takayuki Arakawa, Hajime Takayama,
  Randomness Effects on Quantum Phase Transitions of Bond-Alternating Haldane Chain,
  Invited review article in Annual Report 2003 of Supercomputer Center, Institute for Solid State Physics, University of Tokyo (2004).
• Synge Todo,
  Quantum Monte Carlo Study of Two-Dimensional Random Heisenberg Antiferromagnets,
  Invited review article in Anuual Report 2000 of Supercomputer Center, Institute for Solid State Physics, University of Tokyo (2001).